Firstly, I made it very clear that I have already downloaded both CRAN 3.3.0 and 3.3.1 versions, normally, and uninstalled all previous versions, I also used the commands: remove.packages ("abind"), remove .packages ("EBImage"), remove.packages ("Biocinstaller"), and removed the "abmi", "biocGenerics", "Biocinstaller" folders from my library (win-library).
Following the steps indicated on the Bioconductor website, I used the commands:
source("https://bioconductor.org/biocLite.R")
has the following message:
> Installing package into ‘C:/Users/Gean/Documents/R/win-library/3.3’
> (as ‘lib’ is unspecified) trying URL
> 'https://bioconductor.org/packages/3.3/bioc/bin/windows/contrib/3.3/BiocInstaller_1.22.3.zip'
Content type 'application/zip' length 119756 bytes (116 KB)
downloaded 116 KB
package ‘BiocInstaller’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\Gean\AppData\Local\Temp\RtmpEnNb2N\downloaded_packages
Bioconductor version 3.3 (BiocInstaller 1.22.3), ?biocLite for help
Next step was the following code:
> biocLite("EBImage")
You have the following message:
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.3 (BiocInstaller 1.22.3), R 3.3.0 (2016-05-03).
Installing package(s) ‘EBImage’
also installing the dependencies ‘BiocGenerics’, ‘abind’
trying URL 'https://bioconductor.org/packages/3.3/bioc/bin/windows/contrib/3.3/BiocGenerics_0.18.0.zip'
Content type 'application/zip' length 966930 bytes (944 KB)
downloaded 944 KB
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.3/abind_1.4-5.zip'
Content type 'application/zip' length 40195 bytes (39 KB)
downloaded 39 KB
trying URL 'https://bioconductor.org/packages/3.3/bioc/bin/windows/contrib/3.3/EBImage_4.14.2.zip'
Content type 'application/zip' length 11238868 bytes (10.7 MB)
downloaded 5.3 MB
package ‘BiocGenerics’ successfully unpacked and MD5 sums checked
package ‘abind’ successfully unpacked and MD5 sums checked
Error in read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) :
cannot open the connection
In addition: Warning messages:
1: In download.file(url, destfile, method, mode = "wb", ...) :
downloaded length 5537792 != reported length 11238868
2: In unzip(zipname, exdir = dest) : error 1 in extracting from zip file
3: In read.dcf(file.path(pkgname, "DESCRIPTION"), c("Package", "Type")) :
cannot open compressed file 'EBImage/DESCRIPTION', probable reason 'No such file or directory'
> library(EBImage)
Error in library(EBImage) : there is no package called ‘EBImage’
> biocLite("EBImage")
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.3 (BiocInstaller 1.22.3), R 3.3.0 (2016-05-03).
Installing package(s) ‘EBImage’
trying URL 'https://bioconductor.org/packages/3.3/bioc/bin/windows/contrib/3.3/EBImage_4.14.2.zip'
Content type 'application/zip' length 11238868 bytes (10.7 MB)
downloaded 10.7 MB
package ‘EBImage’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\Gean\AppData\Local\Temp\RtmpEnNb2N\downloaded_packages
Old packages: 'cluster', 'codetools', 'foreign', 'lattice', 'Matrix', 'mgcv', 'nlme', 'survival'
Update all/some/none? [a/s/n]:
n
> library(EBImage)
Error in library.dynam(lib, package, package.lib) :
DLL ‘tiff’ not found: maybe not installed for this architecture?
Error: package or namespace load failed for ‘EBImage’
I can not understand, if someone has managed to install, please kindly ask me to help!